| BLOCK_INTERVAL | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | static |
| build_occurrence_table(SymbolIterator begin, SymbolIterator end, IndexType *occ, IndexType *cnt=NULL) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| count_table() | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| count_table() const | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| count_table_type typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| index_type typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| m_count_table | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| m_occ | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| m_text | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| occ() | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| occ() const | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| occ_iterator typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| range_type typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| rank(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const IndexType i, const uint32 c) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const typename vector_type< IndexType, 2 >::type range, const uint32 c) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank4(const rank_dictionary< 2, K, TextString, OccIterator, CountTable > &dict, const IndexType i) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank4(const rank_dictionary< 2, K, TextString, OccIterator, CountTable > &dict, const uint2 range, uint4 *outl, uint4 *outh) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank4(const rank_dictionary< 2, K, TextString, OccIterator, CountTable > &dict, const uint64_2 range, uint64_4 *outl, uint64_4 *outh) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank_all(const rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable > &dict, const typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::index_type i) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank_all(const rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable > &dict, const typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::index_type i, typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::vector_type *out) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank_all(const rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable > &dict, const typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::range_type range, typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::vector_type *outl, typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::vector_type *outh) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| rank_dictionary() | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| rank_dictionary(const TextString _text, const OccIterator _occ, const CountTable _count_table) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| symbol_count() const | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| SYMBOL_COUNT | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | static |
| symbol_size() const | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| SYMBOL_SIZE | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | static |
| text() | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| text() const | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | inline |
| text(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const uint32 i) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| text(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const uint64 i) | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | related |
| text_type typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| vec2_type typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| vec4_type typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
| vector_type typedef | nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > | |
1.8.4