suffix.h File Reference

#include <nvbio/strings/string_set.h>

Go to the source code of this file.

Classes
struct	nvbio::SuffixCore< StringType, CoordType, CoordDim >
struct	nvbio::SuffixCore< StringType, CoordType, 1u >
struct	nvbio::SuffixCore< StringType, CoordType, 2u >
struct	nvbio::Suffix< StringType, CoordType >
struct	nvbio::SuffixSetCore< SequenceType, SuffixIterator, CoordDim >
struct	nvbio::SuffixSetCore< SequenceType, SuffixIterator, 1u >
struct	nvbio::SuffixSetCore< SequenceType, SuffixIterator, 2u >
struct	nvbio::SuffixSet< SequenceType, SuffixIterator >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.

Typedefs
typedef uint32	nvbio::string_suffix_coord_type
typedef uint64	nvbio::long_string_suffix_coord_type
typedef uint32_2	nvbio::string_set_suffix_coord_type
typedef uint64_2	nvbio::long_string_set_suffix_coord_type

Functions
template<typename StringType , typename CoordType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE Suffix < StringType, CoordType >	nvbio::make_suffix (const StringType string, const CoordType coords)
template<typename StringType , typename CoordType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	nvbio::string_id (const SuffixCore< StringType, CoordType, 2u > &suffix)
template<typename StringType , typename CoordType , uint32 CoordDim>
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	nvbio::length (const SuffixCore< StringType, CoordType, CoordDim > &suffix)
template<typename string_set_type >
int32	nvbio::compare_suffixes (const string_set_type string_set, const uint2 suffix1, const uint2 suffix2)