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aligner_all.h File Reference
#include <nvbio/basic/cuda/ldg.h>
#include <nvbio/basic/primitives.h>
#include <nvBowtie/bowtie2/cuda/pipeline_states.h>
#include <nvBowtie/bowtie2/cuda/select.h>
#include <nvBowtie/bowtie2/cuda/locate.h>
#include <nvBowtie/bowtie2/cuda/score.h>
#include <nvBowtie/bowtie2/cuda/reduce.h>
#include <nvBowtie/bowtie2/cuda/traceback.h>
#include <nvbio/io/output/output_types.h>
#include <nvbio/io/output/output_batch.h>
#include <nvbio/io/output/output_file.h>
#include <thrust/iterator/transform_iterator.h>
#include <thrust/adjacent_difference.h>

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Classes

struct  nvbio::bowtie2::cuda::SortingKeys
 
struct  nvbio::bowtie2::cuda::difference_transform< Iterator >
 

Namespaces

 nvbio
 Define a vector_view POD type and plain_view() for std::vector.
 
 nvbio::bowtie2
 
 nvbio::bowtie2::cuda