aligner_all.h File Reference

#include <nvbio/basic/cuda/ldg.h>
#include <nvbio/basic/primitives.h>
#include <nvBowtie/bowtie2/cuda/pipeline_states.h>
#include <nvBowtie/bowtie2/cuda/select.h>
#include <nvBowtie/bowtie2/cuda/locate.h>
#include <nvBowtie/bowtie2/cuda/score.h>
#include <nvBowtie/bowtie2/cuda/reduce.h>
#include <nvBowtie/bowtie2/cuda/traceback.h>
#include <nvbio/io/output/output_types.h>
#include <nvbio/io/output/output_batch.h>
#include <nvbio/io/output/output_file.h>
#include <thrust/iterator/transform_iterator.h>
#include <thrust/adjacent_difference.h>

Go to the source code of this file.

Classes
struct	nvbio::bowtie2::cuda::SortingKeys
struct	nvbio::bowtie2::cuda::difference_transform< Iterator >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda