alignment_base_inl.h File Reference

#include <nvbio/basic/types.h>
#include <nvbio/alignment/utils.h>

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Classes
struct	nvbio::aln::priv::alignment_score_dispatch< aligner_type, pattern_string, qual_string, text_string, column_type >
struct	nvbio::aln::priv::alignment_checkpointed_dispatch< CHECKPOINTS, aligner_type, pattern_string, qual_string, text_string, column_type >
struct	nvbio::aln::priv::banded_alignment_score_dispatch< BAND_LEN, aligner_type, pattern_string, qual_string, text_string >
struct	nvbio::aln::priv::banded_alignment_checkpointed_dispatch< BAND_LEN, CHECKPOINTS, aligner_type, pattern_string, qual_string, text_string >
struct	nvbio::aln::priv::Reference_cache< BAND_SIZE >
struct	nvbio::aln::priv::Reference_cache< 15u >
struct	nvbio::aln::priv::Reference_cache< 7u >
struct	nvbio::aln::priv::Reference_cache< 5u >
struct	nvbio::aln::priv::Reference_cache< 3u >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::aln
	nvbio::aln::priv