bidir.h File Reference

#include <nvbio/fmindex/fmindex.h>
#include <nvbio/fmindex/bidir_inl.h>

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Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.

Functions
template<typename TRankDictionary1 , typename TSuffixArray1 , typename TRankDictionary2 , typename TSuffixArray2 >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	nvbio::extend_forward (const fm_index< TRankDictionary1, TSuffixArray1 > &f_fmi, const fm_index< TRankDictionary2, TSuffixArray2 > &r_fmi, typename fm_index< TRankDictionary1, TSuffixArray1 >::range_type &f_range, typename fm_index< TRankDictionary2, TSuffixArray2 >::range_type &r_range, uint8 c)
template<typename TRankDictionary1 , typename TSuffixArray1 , typename TRankDictionary2 , typename TSuffixArray2 >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	nvbio::extend_backwards (const fm_index< TRankDictionary1, TSuffixArray1 > &f_fmi, const fm_index< TRankDictionary2, TSuffixArray2 > &r_fmi, typename fm_index< TRankDictionary1, TSuffixArray1 >::range_type &f_range, typename fm_index< TRankDictionary2, TSuffixArray2 >::range_type &r_range, uint8 c)