bwt.h File Reference

#include <nvbio/basic/types.h>
#include <sais.h>

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Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.

Functions
template<typename StreamIterator >
uint32	nvbio::gen_sa (const uint32 n, const StreamIterator T, int32 *SA)
template<typename StreamIterator >
uint32	nvbio::gen_bwt_from_sa (const uint32 n, const StreamIterator T, const int32 *SA, StreamIterator bwt)
template<typename StreamIterator >
int32	nvbio::gen_bwt (const uint32 n, const StreamIterator T, int32 *buffer, StreamIterator bwt)
template<typename StreamIterator >
int64	nvbio::gen_bwt (const uint32 n, const StreamIterator T, int64 *buffer, StreamIterator bwt)
void	nvbio::gen_bwt_count_table (uint32 *count_table)