filelist.cpp

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/*
 * nvbio
 * Copyright (c) 2011-2014, NVIDIA CORPORATION. All rights reserved.
 * 
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
 *    * Redistributions of source code must retain the above copyright
 *      notice, this list of conditions and the following disclaimer.
 *    * Redistributions in binary form must reproduce the above copyright
 *      notice, this list of conditions and the following disclaimer in the
 *      documentation and/or other materials provided with the distribution.
 *    * Neither the name of the NVIDIA CORPORATION nor the
 *      names of its contributors may be used to endorse or promote products
 *      derived from this software without specific prior written permission.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
 * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
 * DISCLAIMED. IN NO EVENT SHALL NVIDIA CORPORATION BE LIABLE FOR ANY
 * DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
 * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
 * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
 * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */

#include <string>
#include <vector>
#include <stdio.h>
#include <stdlib.h>
#include <algorithm>
#ifdef _WIN32
#include <io.h>
#else
#include <glob.h>
#endif
#include <string.h>
#include <nvbio/basic/types.h>
#include <nvbio/basic/console.h>

/* Appends sorted list of files matching pattern to out_list.
 * Should work on linux or windows */
void list_files(const char* pattern, std::vector<std::string>& out_list)
{
#ifdef _WIN32
    const char dirsep = '\\';
#else
    const char dirsep = '/';
#endif

    std::string base_input_name(pattern);
    size_t last_slash = base_input_name.rfind(dirsep);
    std::string base_path = base_input_name.substr( 0, last_slash+1 );
    log_info(stderr, "directory  : \"%s\"\n", base_path.c_str());

    typedef std::pair<nvbio::uint32, std::string> sortkey;
    std::vector<sortkey> files;
    sortkey temp;

#ifdef _WIN32

    _finddata_t file_info;
    intptr_t find_handle = _findfirst( base_input_name.c_str(), &file_info );
    if (find_handle == -1)
    {
        log_error(stderr, "unable to locate \"%s\"", base_input_name.c_str());
        exit(1);
    }

    do {
      temp.second = base_path + std::string( file_info.name );
      files.push_back(temp);
    } while (_findnext( find_handle, &file_info) != -1);

#else

    glob_t info;
    int stat = glob( base_input_name.c_str(), 0, 0, &info );
    if( stat != 0 )
    {
        fprintf(stderr, "unable to locate \"%s\"", base_input_name.c_str());
        exit(1);
    }
    for(nvbio::uint32 i=0; i<info.gl_pathc; ++i) {
        temp.second = std::string( info.gl_pathv[i] );
        files.push_back(temp);
    }
    globfree(&info);

#endif

    // Figure out what the sort number should be for each file
    // We sort by the last block of numbers before the last dot
    std::vector<sortkey>::iterator iter;
    for(iter=files.begin(); iter!=files.end(); ++iter) {
        size_t end, begin;
        std::string numstring;
        end = iter->second.find_last_of(".");
        end = iter->second.find_last_of("0123456789", end);
        if( end == std::string::npos ) {
            // no numbers in file
            iter->first = -1; // sort will be random but before numbers
        } else {
            begin = 1 + iter->second.find_last_not_of("0123456789", end);
            numstring = iter->second.substr(begin, end-begin+1);
            iter->first = atoi( numstring.c_str() );
        }
    }
    std::sort(files.begin(), files.end());
    
    for(iter=files.begin(); iter!=files.end(); ++iter) {
        out_list.push_back(iter->second);
    }
}