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Alignment Sinks

Detailed Description

An alignment sink is an object passed to alignment functions to handle the terminal (cell,score)- pairs of all valid alignments. A particular sink might decide to discard or store all such alignments, while another might decide to store only the best, or the best N, and so on.


struct  nvbio::aln::NullSink
struct  nvbio::aln::BestSink< ScoreType >
struct  nvbio::aln::BestSink< simd4u8 >
struct  nvbio::aln::Best2Sink< ScoreType >
struct  nvbio::aln::BestColumnSink< ScoreType, N >