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htslib
cram
mFILE.h
Go to the documentation of this file.
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/*
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Copyright (c) 2005-2006, 2008-2009 Genome Research Ltd.
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Author: James Bonfield <jkb@sanger.ac.uk>
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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1. Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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2. Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
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Institute nor the names of its contributors may be used to endorse or promote
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products derived from this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
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ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
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FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#ifndef _MFILE_H_
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#define _MFILE_H_
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#include <stdio.h>
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#ifdef __cplusplus
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extern
"C"
{
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#endif
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typedef
struct
{
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FILE *
fp
;
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char
*
data
;
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size_t
alloced
;
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int
eof
;
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int
mode
;
/* open mode in MF_?? define bit pattern */
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size_t
size
;
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size_t
offset
;
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size_t
flush_pos
;
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}
mFILE
;
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#define MF_READ 1
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#define MF_WRITE 2
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#define MF_APPEND 4
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#define MF_BINARY 8
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#define MF_TRUNC 16
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#define MF_MODEX 32
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mFILE
*
mfreopen
(
const
char
*path,
const
char
*mode, FILE *fp);
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mFILE
*
mfopen
(
const
char
*path,
const
char
*mode);
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int
mfdetach
(
mFILE
*mf);
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int
mfclose
(
mFILE
*mf);
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int
mfdestroy
(
mFILE
*mf);
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int
mfseek
(
mFILE
*mf,
long
offset,
int
whence);
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long
mftell
(
mFILE
*mf);
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void
mrewind
(
mFILE
*mf);
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void
mftruncate
(
mFILE
*mf,
long
offset);
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int
mfeof
(
mFILE
*mf);
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size_t
mfread
(
void
*ptr,
size_t
size,
size_t
nmemb,
mFILE
*mf);
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size_t
mfwrite
(
void
*ptr,
size_t
size,
size_t
nmemb,
mFILE
*mf);
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int
mfgetc
(
mFILE
*mf);
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int
mungetc
(
int
c,
mFILE
*mf);
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mFILE
*
mfcreate
(
char
*data,
int
size);
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mFILE
*
mfcreate_from
(
const
char
*path,
const
char
*mode_str, FILE *fp);
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void
mfrecreate
(
mFILE
*mf,
char
*data,
int
size);
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void
*
mfsteal
(
mFILE
*mf,
size_t
*size_out);
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char
*
mfgets
(
char
*s,
int
size,
mFILE
*mf);
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int
mfflush
(
mFILE
*mf);
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int
mfprintf
(
mFILE
*mf,
char
*fmt, ...);
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mFILE
*
mstdin
(
void
);
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mFILE
*
mstdout
(
void
);
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mFILE
*
mstderr
(
void
);
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void
mfascii
(
mFILE
*mf);
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#ifdef __cplusplus
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}
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#endif
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#endif
/* _MFILE_H_ */
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