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nvSSA is an application built on top of NVBIO to build the Sampled Suffix Arrays given a set of BWT files.
Given a BWT-based index generated with nvBWT (e.g. my-index.*), it will generate both the forward and reverse SSAs.
Note: this is not normally needed, as nvBWT does already output them.
*  ./nvSSA my-index
will create the files:
*  my-index.sa
*  my-index.rsa