packedstream_inl.h File Reference

#include <nvbio/basic/cached_iterator.h>

Go to the source code of this file.

Classes
struct	nvbio::packer< BIG_ENDIAN_T, SYMBOL_SIZE, Symbol, InputStream, IndexType, ValueType >
struct	nvbio::packer< BIG_ENDIAN_T, SYMBOL_SIZE, Symbol, InputStream, IndexType, uint32 >
struct	nvbio::packer< BIG_ENDIAN_T, SYMBOL_SIZE, Symbol, InputStream, IndexType, uint64 >
struct	nvbio::packer< BIG_ENDIAN_T, SYMBOL_SIZE, Symbol, InputStream, IndexType, uint8 >
struct	nvbio::packer< BIG_ENDIAN_T, 2u, Symbol, InputStream, IndexType, uint32 >
struct	nvbio::packer< BIG_ENDIAN_T, 4u, Symbol, InputStream, IndexType, uint32 >
struct	nvbio::packer< BIG_ENDIAN_T, 2u, Symbol, InputStream, IndexType, uint4 >
struct	nvbio::packer< BIG_ENDIAN_T, 4u, Symbol, InputStream, IndexType, uint4 >
struct	nvbio::packer< BIG_ENDIAN_T, 8u, Symbol, InputStream, IndexType, uint4 >
struct	nvbio::packer< BIG_ENDIAN_T, 2u, Symbol, InputStream, IndexType, uint64 >
struct	nvbio::packer< BIG_ENDIAN_T, 4u, Symbol, InputStream, IndexType, uint64 >
struct	nvbio::forward_packer< BIG_ENDIAN, SYMBOL_SIZE, Symbol, InputStream, IndexType, ValueType >
struct	nvbio::forward_packer< BIG_ENDIAN, SYMBOL_SIZE, Symbol, InputStream, IndexType, uint4 >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::priv

Functions
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator< (const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator> (const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator== (const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator!= (const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator< (const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator> (const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator== (const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator!= (const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it1, const ForwardPackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > &it2)
template<typename InputIterator , typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_HOST_DEVICE void	nvbio::priv::serial_assign (const IndexType input_len, InputIterator input_string, PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > packed_string)
template<typename InputIterator , typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_HOST_DEVICE void	nvbio::assign (const host_tag tag, const IndexType input_len, const InputIterator input_string, PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > packed_string)
template<typename InputIterator , typename InputStream , typename Symbol , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename IndexType >
NVBIO_HOST_DEVICE void	nvbio::assign (const IndexType input_len, const InputIterator input_string, PackedStream< InputStream, Symbol, SYMBOL_SIZE_T, BIG_ENDIAN_T, IndexType > packed_string)
template<uint32 BLOCKDIM, uint32 BITS, bool BIG_ENDIAN, typename InStreamIterator , typename OutStreamIterator >
NVBIO_HOST_DEVICE void	nvbio::transpose_packed_streams (const uint32 stride, const uint32 N, const uint32 in_offset, const InStreamIterator in_stream, OutStreamIterator out_stream)