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score_all_impl.h File Reference
#include <nvbio/alignment/alignment.h>
#include <nvbio/alignment/batched.h>
#include <nvbio/io/utils.h>
#include <nvBowtie/bowtie2/cuda/score_all_inl.h>

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Classes

struct  nvbio::bowtie2::cuda::BaseScoringPipelineState< ScoringScheme >
 
struct  nvbio::bowtie2::cuda::BestApproxScoringPipelineState< ScoringScheme >
 

Namespaces

 nvbio
 Define a vector_view POD type and plain_view() for std::vector.
 
 nvbio::bowtie2
 
 nvbio::bowtie2::cuda
 

Functions

template<typename scheme_type >
uint32 nvbio::bowtie2::cuda::score_all_t (const uint32 band_len, const AllMappingPipelineState< scheme_type > &pipeline, const ParamsPOD params, const uint32 buffer_offset, const uint32 buffer_size)