score_all_impl.h File Reference

#include <nvbio/alignment/alignment.h>
#include <nvbio/alignment/batched.h>
#include <nvbio/io/utils.h>
#include <nvBowtie/bowtie2/cuda/score_all_inl.h>

Go to the source code of this file.

Classes
struct	nvbio::bowtie2::cuda::BaseScoringPipelineState< ScoringScheme >
struct	nvbio::bowtie2::cuda::BestApproxScoringPipelineState< ScoringScheme >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda

Functions
template<typename scheme_type >
uint32	nvbio::bowtie2::cuda::score_all_t (const uint32 band_len, const AllMappingPipelineState< scheme_type > &pipeline, const ParamsPOD params, const uint32 buffer_offset, const uint32 buffer_size)