score_all_inl.h File Reference

#include <nvBowtie/bowtie2/cuda/alignment_utils.h>
#include <nvBowtie/bowtie2/cuda/pipeline_states.h>

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Classes
struct	nvbio::bowtie2::cuda::detail::AllScoreStream< AlignerType, PipelineType >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda
	nvbio::bowtie2::cuda::detail

Functions
template<typename aligner_type , typename pipeline_type >
void	nvbio::bowtie2::cuda::detail::banded_score_all (const uint32 band_len, const pipeline_type &pipeline, const aligner_type aligner, const ParamsPOD params, const uint32 buffer_offset, const uint32 buffer_size, uint32 *counter)
template<typename scheme_type >
uint32	nvbio::bowtie2::cuda::score_all_t (const uint32 band_len, const AllMappingPipelineState< scheme_type > &pipeline, const ParamsPOD params, const uint32 buffer_offset, const uint32 buffer_size)