score_opposite_inl.h File Reference

#include <nvBowtie/bowtie2/cuda/alignment_utils.h>
#include <nvBowtie/bowtie2/cuda/pipeline_states.h>

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Classes
struct	nvbio::bowtie2::cuda::detail::BestOppositeScoreStream< AlignerType, PipelineType >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda
	nvbio::bowtie2::cuda::detail

Functions
template<typename aligner_type , typename pipeline_type >
void	nvbio::bowtie2::cuda::detail::opposite_score_best (const pipeline_type &pipeline, const aligner_type aligner, const ParamsPOD params)