NVBIO
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
Classes | Namespaces | Functions
score_paired_inl.h File Reference
#include <nvBowtie/bowtie2/cuda/alignment_utils.h>
#include <nvBowtie/bowtie2/cuda/pipeline_states.h>

Go to the source code of this file.

Classes

struct  nvbio::bowtie2::cuda::detail::BestAnchorScoreStream< AlignerType, PipelineType >
 

Namespaces

 nvbio
 Define a vector_view POD type and plain_view() for std::vector.
 
 nvbio::bowtie2
 
 nvbio::bowtie2::cuda
 
 nvbio::bowtie2::cuda::detail
 

Functions

template<typename aligner_type , typename pipeline_type >
void nvbio::bowtie2::cuda::detail::banded_anchor_score_best (const uint32 band_len, const pipeline_type &pipeline, const aligner_type aligner, const ParamsPOD params)
 
template<typename scheme_type >
void nvbio::bowtie2::cuda::anchor_score_best_t (const uint32 band_len, const BestApproxScoringPipelineState< scheme_type > &pipeline, const ParamsPOD params)