score_paired_inl.h File Reference

#include <nvBowtie/bowtie2/cuda/alignment_utils.h>
#include <nvBowtie/bowtie2/cuda/pipeline_states.h>

Go to the source code of this file.

Classes
struct	nvbio::bowtie2::cuda::detail::BestAnchorScoreStream< AlignerType, PipelineType >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda
	nvbio::bowtie2::cuda::detail

Functions
template<typename aligner_type , typename pipeline_type >
void	nvbio::bowtie2::cuda::detail::banded_anchor_score_best (const uint32 band_len, const pipeline_type &pipeline, const aligner_type aligner, const ParamsPOD params)
template<typename scheme_type >
void	nvbio::bowtie2::cuda::anchor_score_best_t (const uint32 band_len, const BestApproxScoringPipelineState< scheme_type > &pipeline, const ParamsPOD params)