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seeds_inl.h File Reference

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Classes

struct  nvbio::project_coords_functor< in_coord_type, out_coord_type >
 
struct  nvbio::project_coords_functor< uint32, uint32 >
 
struct  nvbio::project_coords_functor< uint64, uint64 >
 
struct  nvbio::project_coords_functor< in_coord_type, uint32 >
 
struct  nvbio::project_coords_functor< in_coord_type, uint2 >
 
struct  nvbio::project_coords_functor< in_coord_type, uint3 >
 
struct  nvbio::project_coords_functor< in_coord_type, uint4 >
 
struct  nvbio::string_seed_functor< index_type, seed_functor, coord_type >
 
struct  nvbio::localized_seed_functor< string_set_type, seed_functor, coord_type >
 

Namespaces

 nvbio
 Define a vector_view POD type and plain_view() for std::vector.
 

Functions

template<typename out_coord_type , typename in_coord_type >
NVBIO_FORCEINLINE
NVBIO_HOST_DEVICE
out_coord_type 
nvbio::project_coords (const in_coord_type i)
 
template<typename index_type , typename seed_functor , typename index_vector_type >
index_type nvbio::enumerate_string_seeds (const index_type string_len, const seed_functor seeder, index_vector_type &indices)
 
template<typename string_set_type , typename seed_functor , typename index_vector_type >
uint64 nvbio::enumerate_string_set_seeds (const string_set_type string_set, const seed_functor seeder, index_vector_type &indices)