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template<typename ScoringScheme > |
void | nvbio::bowtie2::cuda::select_init_t (BestApproxScoringPipelineState< ScoringScheme > &pipeline, const ParamsPOD ¶ms) |
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template<typename BatchType , typename ContextType > |
void | nvbio::bowtie2::cuda::select (const BatchType read_batch, SeedHitDequeArrayDeviceView hits, const ContextType context, ScoringQueuesDeviceView scoring_queues, const ParamsPOD params) |
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template<typename BatchType , typename ContextType > |
void | nvbio::bowtie2::cuda::rand_select (const BatchType read_batch, SeedHitDequeArrayDeviceView hits, uint32 *rseeds, const ContextType context, ScoringQueuesDeviceView scoring_queues, const ParamsPOD params) |
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template<typename BatchType , typename ContextType > |
void | nvbio::bowtie2::cuda::select_multi (const BatchType read_batch, SeedHitDequeArrayDeviceView hits, const ContextType context, ScoringQueuesDeviceView scoring_queues, const uint32 n_multi, const ParamsPOD params) |
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template<typename BatchType , typename ContextType > |
void | nvbio::bowtie2::cuda::select (const BatchType read_batch, SeedHitDequeArrayDeviceView hits, uint32 *rseeds, const ContextType context, ScoringQueuesDeviceView scoring_queues, const uint32 n_multi, const ParamsPOD params) |
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template<typename ScoringScheme , typename ContextType > |
void | nvbio::bowtie2::cuda::select_t (const ContextType context, const BestApproxScoringPipelineState< ScoringScheme > &pipeline, const ParamsPOD params) |
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