NVBIO
Main Page
Modules
Classes
Examples
File List
File Members
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Groups
Pages
contrib
htslib
cram
string_alloc.c
Go to the documentation of this file.
1
/*
2
Copyright (c) 2010 Genome Research Ltd.
3
Author: Andrew Whitwham <aw7@sanger.ac.uk>
4
5
Redistribution and use in source and binary forms, with or without
6
modification, are permitted provided that the following conditions are met:
7
8
1. Redistributions of source code must retain the above copyright notice,
9
this list of conditions and the following disclaimer.
10
11
2. Redistributions in binary form must reproduce the above copyright notice,
12
this list of conditions and the following disclaimer in the documentation
13
and/or other materials provided with the distribution.
14
15
3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
16
Institute nor the names of its contributors may be used to endorse or promote
17
products derived from this software without specific prior written permission.
18
19
THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
20
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
21
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
22
DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
23
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
24
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
25
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
26
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
27
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
28
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29
*/
30
31
32
/*
33
A pooled string allocator intended to cut down on the
34
memory overhead of many small string allocations.
35
36
Andrew Whitwham, September 2010.
37
*/
38
39
#include <
string.h
>
40
#include <stdlib.h>
41
#include <stdio.h>
42
43
#include "
string_alloc.h
"
44
45
#define MIN_STR_SIZE 1024
46
47
48
/* creates the string pool. max_length is the initial size
49
a single string can be. Tha max_length can grow as
50
needed */
51
52
string_alloc_t
*
string_pool_create
(
size_t
max_length) {
53
string_alloc_t
*a_str;
54
55
if
(NULL == (a_str = (
string_alloc_t
*)malloc(
sizeof
(*a_str)))) {
56
return
NULL;
57
}
58
59
if
(max_length <
MIN_STR_SIZE
) max_length =
MIN_STR_SIZE
;
60
61
a_str->
nstrings
= 0;
62
a_str->
max_length
= max_length;
63
a_str->
strings
= NULL;
64
65
return
a_str;
66
}
67
68
69
/* internal function to do the actual memory allocation */
70
71
static
string_t
*new_string_pool(
string_alloc_t
*a_str) {
72
string_t
*str;
73
74
str = realloc(a_str->
strings
, (a_str->
nstrings
+ 1) *
sizeof
(*a_str->
strings
));
75
76
if
(NULL == str)
return
NULL;
77
78
a_str->
strings
= str;
79
str = &a_str->
strings
[a_str->
nstrings
];
80
81
str->
str
= malloc(a_str->
max_length
);;
82
83
if
(NULL == str->
str
)
return
NULL;
84
85
str->
used
= 0;
86
a_str->
nstrings
++;
87
88
return
str;
89
}
90
91
92
/* free allocated memory */
93
94
void
string_pool_destroy
(
string_alloc_t
*a_str) {
95
size_t
i;
96
97
for
(i = 0; i < a_str->
nstrings
; i++) {
98
free(a_str->
strings
[i].
str
);
99
}
100
101
free(a_str->
strings
);
102
free(a_str);
103
}
104
105
106
/* allocate space for a string */
107
108
char
*
string_alloc
(
string_alloc_t
*a_str,
size_t
length
) {
109
string_t
*str;
110
char
*ret;
111
112
if
(length <= 0)
return
NULL;
113
114
// add to last string pool if we have space
115
if
(a_str->
nstrings
) {
116
str = &a_str->
strings
[a_str->
nstrings
- 1];
117
118
if
(str->
used
+ length < a_str->max_length) {
119
ret = str->
str
+ str->
used
;
120
str->
used
+=
length
;
121
return
ret;
122
}
123
}
124
125
// increase the max length if needs be
126
if
(length > a_str->
max_length
) a_str->
max_length
=
length
;
127
128
// need a new string pool
129
str = new_string_pool(a_str);
130
131
if
(NULL == str)
return
NULL;
132
133
str->
used
=
length
;
134
return
str->
str
;
135
}
136
137
138
/* equivalent to strdup */
139
140
char
*
string_dup
(
string_alloc_t
*a_str,
char
*instr) {
141
return
string_ndup
(a_str, instr, strlen(instr));
142
}
143
144
char
*
string_ndup
(
string_alloc_t
*a_str,
char
*instr,
size_t
len) {
145
char
*str =
string_alloc
(a_str, len + 1);
146
147
if
(NULL == str)
return
NULL;
148
149
strncpy(str, instr, len);
150
str[len] = 0;
151
152
return
str;
153
}
Generated on Wed Feb 25 2015 08:32:47 for NVBIO by
1.8.4