BamTools::BamAlignment Member List

This is the complete list of members for BamTools::BamAlignment, including all inherited members.

AlignedBases	BamTools::BamAlignment
AlignmentFlag	BamTools::BamAlignment
Bin	BamTools::BamAlignment
CigarData	BamTools::BamAlignment
DeltaData	BamTools::BamAlignment
DUPLICATE enum value	BamTools::BamAlignment
GetEditDistance(uint8_t &editDistance) const	BamTools::BamAlignment	inline
GetReadGroup(std::string &readGroup) const	BamTools::BamAlignment	inline
GetTag(const char *tagName, T &tagVal) const	BamTools::BamAlignment	inline
GetTag(const char *tagName) const	BamTools::BamAlignment	inline
InsertSize	BamTools::BamAlignment
IsDuplicate(void) const	BamTools::BamAlignment	inline
IsFailedQC(void) const	BamTools::BamAlignment	inline
IsFirstMate(void) const	BamTools::BamAlignment	inline
IsMapped(void) const	BamTools::BamAlignment	inline
IsMateMapped(void) const	BamTools::BamAlignment	inline
IsMateReverseStrand(void) const	BamTools::BamAlignment	inline
IsPaired(void) const	BamTools::BamAlignment	inline
IsPrimaryAlignment(void) const	BamTools::BamAlignment	inline
IsProperPair(void) const	BamTools::BamAlignment	inline
IsReverseStrand(void) const	BamTools::BamAlignment	inline
IsSecondMate(void) const	BamTools::BamAlignment	inline
Length	BamTools::BamAlignment
MapQuality	BamTools::BamAlignment
MATE_REVERSE enum value	BamTools::BamAlignment
MATE_UNMAPPED enum value	BamTools::BamAlignment
MatePosition	BamTools::BamAlignment
MateRefID	BamTools::BamAlignment
Name	BamTools::BamAlignment
PAIRED enum value	BamTools::BamAlignment
Position	BamTools::BamAlignment
PROPER_PAIR enum value	BamTools::BamAlignment
QC_FAILED enum value	BamTools::BamAlignment
Qualities	BamTools::BamAlignment
QueryBases	BamTools::BamAlignment
READ_1 enum value	BamTools::BamAlignment
READ_2 enum value	BamTools::BamAlignment
RefID	BamTools::BamAlignment
REVERSE enum value	BamTools::BamAlignment
SECONDARY enum value	BamTools::BamAlignment
TagData	BamTools::BamAlignment
UNMAPPED enum value	BamTools::BamAlignment