| active_region_ids | D_KmerSet< string_set_type > | |
| collapse_and_extract_non_overlaps(D_VectorSetKmerCoord &kmers_out, D_VectorU32 &prefix_ids_out, D_VectorU32 &suffix_ids_out, D_VectorU32 &counts_out) | D_KmerSet< string_set_type > | |
| coords | D_KmerSet< string_set_type > | |
| count_distinct_by_prefix(D_VectorU32 &prefix_unique_id_map) | D_KmerSet< string_set_type > | |
| count_distinct_by_prefix() | D_KmerSet< string_set_type > | |
| count_kmers() | D_KmerSet< string_set_type > | |
| count_kmers_rle() | D_KmerSet< string_set_type > | |
| D_KmerSet() | D_KmerSet< string_set_type > | inline |
| D_KmerSet(const string_set_type _string_set, const uint32 _kmer_size) | D_KmerSet< string_set_type > | inline |
| D_KmerSet(const string_set_type _string_set, const D_VectorU32 &_active_region_ids) | D_KmerSet< string_set_type > | inline |
| extract_super_kmers() | D_KmerSet< string_set_type > | |
| filter_coords_by_prefix_uniqueness(const D_VectorU8 &unique_map) | D_KmerSet< string_set_type > | |
| gen_global_to_sorted_id_map() | D_KmerSet< string_set_type > | |
| gen_global_UID_map() | D_KmerSet< string_set_type > | |
| gen_global_unique_map() | D_KmerSet< string_set_type > | |
| gen_kmer_64b_keys() | D_KmerSet< string_set_type > | |
| gen_kmer_coords() | D_KmerSet< string_set_type > | |
| gen_prefix_map() | D_KmerSet< string_set_type > | |
| get_scratch_space(uint32 size) | D_KmerSet< string_set_type > | inline |
| global_to_sorted_id_map | D_KmerSet< string_set_type > | |
| global_to_UID_map | D_KmerSet< string_set_type > | |
| global_unique_flag_map | D_KmerSet< string_set_type > | |
| init_alloc_temp_space() | D_KmerSet< string_set_type > | inline |
| kmer_size | D_KmerSet< string_set_type > | |
| kmers_64b | D_KmerSet< string_set_type > | |
| kmers_64b_distinct | D_KmerSet< string_set_type > | |
| kmers_64b_repeat_idxs | D_KmerSet< string_set_type > | |
| kmers_64b_unique_idxs | D_KmerSet< string_set_type > | |
| kmers_counts | D_KmerSet< string_set_type > | |
| mark_unique_kmers() | D_KmerSet< string_set_type > | |
| n_alloc | D_KmerSet< string_set_type > | |
| n_distinct | D_KmerSet< string_set_type > | |
| n_kmers | D_KmerSet< string_set_type > | |
| n_repeat | D_KmerSet< string_set_type > | |
| n_super_coords | D_KmerSet< string_set_type > | |
| n_unique | D_KmerSet< string_set_type > | |
| partition_kmers_by_uniqueness() | D_KmerSet< string_set_type > | |
| reset_scratch_space() | D_KmerSet< string_set_type > | inline |
| scratch_u32 | D_KmerSet< string_set_type > | |
| segmented_sort_kmers_by_64b_keys() | D_KmerSet< string_set_type > | |
| selector | D_KmerSet< string_set_type > | |
| sort_kmers_by_64b_keys() | D_KmerSet< string_set_type > | |
| sort_kmers_by_64b_keys_meta(const meta_iterator_type meta_data) | D_KmerSet< string_set_type > | |
| sort_kmers_by_64b_keys_seqid() | D_KmerSet< string_set_type > | |
| sort_kmers_by_64b_keys_seqid_meta(const meta_iterator_type meta_data) | D_KmerSet< string_set_type > | |
| string_set | D_KmerSet< string_set_type > | |
| super_coords | D_KmerSet< string_set_type > | |
| super_prefix_uids | D_KmerSet< string_set_type > | |
| super_suffix_uids | D_KmerSet< string_set_type > | |
1.8.4