This is the complete list of members for D_KmerSet< string_set_type >, including all inherited members.

active_region_ids	D_KmerSet< string_set_type >
collapse_and_extract_non_overlaps(D_VectorSetKmerCoord &kmers_out, D_VectorU32 &prefix_ids_out, D_VectorU32 &suffix_ids_out, D_VectorU32 &counts_out)	D_KmerSet< string_set_type >
coords	D_KmerSet< string_set_type >
count_distinct_by_prefix(D_VectorU32 &prefix_unique_id_map)	D_KmerSet< string_set_type >
count_distinct_by_prefix()	D_KmerSet< string_set_type >
count_kmers()	D_KmerSet< string_set_type >
count_kmers_rle()	D_KmerSet< string_set_type >
D_KmerSet()	D_KmerSet< string_set_type >	inline
D_KmerSet(const string_set_type _string_set, const uint32 _kmer_size)	D_KmerSet< string_set_type >	inline
D_KmerSet(const string_set_type _string_set, const D_VectorU32 &_active_region_ids)	D_KmerSet< string_set_type >	inline
extract_super_kmers()	D_KmerSet< string_set_type >
filter_coords_by_prefix_uniqueness(const D_VectorU8 &unique_map)	D_KmerSet< string_set_type >
gen_global_to_sorted_id_map()	D_KmerSet< string_set_type >
gen_global_UID_map()	D_KmerSet< string_set_type >
gen_global_unique_map()	D_KmerSet< string_set_type >
gen_kmer_64b_keys()	D_KmerSet< string_set_type >
gen_kmer_coords()	D_KmerSet< string_set_type >
gen_prefix_map()	D_KmerSet< string_set_type >
get_scratch_space(uint32 size)	D_KmerSet< string_set_type >	inline
global_to_sorted_id_map	D_KmerSet< string_set_type >
global_to_UID_map	D_KmerSet< string_set_type >
global_unique_flag_map	D_KmerSet< string_set_type >
init_alloc_temp_space()	D_KmerSet< string_set_type >	inline
kmer_size	D_KmerSet< string_set_type >
kmers_64b	D_KmerSet< string_set_type >
kmers_64b_distinct	D_KmerSet< string_set_type >
kmers_64b_repeat_idxs	D_KmerSet< string_set_type >
kmers_64b_unique_idxs	D_KmerSet< string_set_type >
kmers_counts	D_KmerSet< string_set_type >
mark_unique_kmers()	D_KmerSet< string_set_type >
n_alloc	D_KmerSet< string_set_type >
n_distinct	D_KmerSet< string_set_type >
n_kmers	D_KmerSet< string_set_type >
n_repeat	D_KmerSet< string_set_type >
n_super_coords	D_KmerSet< string_set_type >
n_unique	D_KmerSet< string_set_type >
partition_kmers_by_uniqueness()	D_KmerSet< string_set_type >
reset_scratch_space()	D_KmerSet< string_set_type >	inline
scratch_u32	D_KmerSet< string_set_type >
segmented_sort_kmers_by_64b_keys()	D_KmerSet< string_set_type >
selector	D_KmerSet< string_set_type >
sort_kmers_by_64b_keys()	D_KmerSet< string_set_type >
sort_kmers_by_64b_keys_meta(const meta_iterator_type meta_data)	D_KmerSet< string_set_type >
sort_kmers_by_64b_keys_seqid()	D_KmerSet< string_set_type >
sort_kmers_by_64b_keys_seqid_meta(const meta_iterator_type meta_data)	D_KmerSet< string_set_type >
string_set	D_KmerSet< string_set_type >
super_coords	D_KmerSet< string_set_type >
super_prefix_uids	D_KmerSet< string_set_type >
super_suffix_uids	D_KmerSet< string_set_type >