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assembly_pipeline Member List

This is the complete list of members for assembly_pipeline, including all inherited members.

active_region_sizeassembly_pipelinestatic
d_active_region_idsassembly_pipeline
d_active_region_offsetsassembly_pipeline
d_refassembly_pipeline
d_ref_seqsassembly_pipeline
d_seq_setassembly_pipeline
d_set_offsetsassembly_pipeline
d_set_seqs_dataassembly_pipeline
increaze_kmer_size_for_cyclesassembly_pipelinestatic
k_best_haplotypesassembly_pipelinestatic
kmer_sizeassembly_pipelinestatic
load_ref(io::SequenceDataHost &h_ref)assembly_pipelineinline
max_reads_in_region_per_sampleassembly_pipelinestatic
max_ref_sizeassembly_pipelinestatic
min_reads_per_alignment_startassembly_pipelinestatic
prep_assembly_sequences(const io::SequenceDataHost &h_ref, const BAM_alignment_batch_SoA &read_batch, const H_VectorActiveRegions active_regions)assembly_pipelineinline
ref_paddingassembly_pipelinestatic