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debruijn_graph Member List

This is the complete list of members for debruijn_graph, including all inherited members.

compute_complexity()debruijn_graph
compute_edge_weights()debruijn_graph
compute_in_adjacencies()debruijn_graph
compute_in_degrees()debruijn_graph
compute_subgraph_n_nodes()debruijn_graph
construct_graph(const D_SequenceSet &sequence_set, const D_VectorU32 &d_active_region_ids, const uint32 kmer_size, const bool allow_low_complexity)debruijn_graph
cycle_presencedebruijn_graph
edge_countsdebruijn_graph
edge_ref_flagsdebruijn_graph
edge_weightsdebruijn_graph
find_k_best_paths(const uint32 k)debruijn_graph
has_cycles(const uint32 subgraph_id)debruijn_graphinline
is_low_complexity(const uint32 subgraph_id)debruijn_graphinline
kmer_sizedebruijn_graph
low_complexitydebruijn_graph
n_edgesdebruijn_graph
n_nodesdebruijn_graph
n_subgraphsdebruijn_graph
node_adj_offestsdebruijn_graph
node_adjancency_mapdebruijn_graph
node_in_adj_offestsdebruijn_graph
node_in_adjancency_mapdebruijn_graph
node_in_degreesdebruijn_graph
node_out_degreesdebruijn_graph
nodesdebruijn_graph
operator view()debruijn_graphinline
print_dot_graph(const D_SequenceSet &sequence_set)debruijn_graph
subgraph_n_nodesdebruijn_graph
subgraph_sink_idsdebruijn_graph
subgraph_source_idsdebruijn_graph
topo_sorted_offsetsdebruijn_graph
topo_sorted_uidsdebruijn_graph
topological_sort()debruijn_graph