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debruijn_graph Member List
This is the complete list of members for
debruijn_graph
, including all inherited members.
compute_complexity
()
debruijn_graph
compute_edge_weights
()
debruijn_graph
compute_in_adjacencies
()
debruijn_graph
compute_in_degrees
()
debruijn_graph
compute_subgraph_n_nodes
()
debruijn_graph
construct_graph
(const D_SequenceSet &sequence_set, const D_VectorU32 &d_active_region_ids, const uint32 kmer_size, const bool allow_low_complexity)
debruijn_graph
cycle_presence
debruijn_graph
edge_counts
debruijn_graph
edge_ref_flags
debruijn_graph
edge_weights
debruijn_graph
find_k_best_paths
(const uint32 k)
debruijn_graph
has_cycles
(const uint32 subgraph_id)
debruijn_graph
inline
is_low_complexity
(const uint32 subgraph_id)
debruijn_graph
inline
kmer_size
debruijn_graph
low_complexity
debruijn_graph
n_edges
debruijn_graph
n_nodes
debruijn_graph
n_subgraphs
debruijn_graph
node_adj_offests
debruijn_graph
node_adjancency_map
debruijn_graph
node_in_adj_offests
debruijn_graph
node_in_adjancency_map
debruijn_graph
node_in_degrees
debruijn_graph
node_out_degrees
debruijn_graph
nodes
debruijn_graph
operator view
()
debruijn_graph
inline
print_dot_graph
(const D_SequenceSet &sequence_set)
debruijn_graph
subgraph_n_nodes
debruijn_graph
subgraph_sink_ids
debruijn_graph
subgraph_source_ids
debruijn_graph
topo_sorted_offsets
debruijn_graph
topo_sorted_uids
debruijn_graph
topological_sort
()
debruijn_graph
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