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extract_non_overlapped_repeats< string_set_type > Member List

This is the complete list of members for extract_non_overlapped_repeats< string_set_type >, including all inherited members.

adj_extraction_offsetsextract_non_overlapped_repeats< string_set_type >
chain_offsetsextract_non_overlapped_repeats< string_set_type >
chain_overlapsextract_non_overlapped_repeats< string_set_type >
extract_non_overlapped_repeats(const string_set_type _string_set, const SequenceSetKmerCoord *_chain_coords, const uint32 *_chain_pref_gids, const uint32 *_chain_suffix_gids, const uint32 *_chain_offsets, const uint32 *_adj_extraction_offsets, const uint32 *_chain_overlaps, const uint32 _kmer_size, const uint32 _uid_offset, SequenceSetKmerCoord *_kmers_out, uint32 *_prefix_uids, uint32 *_suffix_uids)extract_non_overlapped_repeats< string_set_type >inline
kmer_sizeextract_non_overlapped_repeats< string_set_type >
kmers_outextract_non_overlapped_repeats< string_set_type >
operator()(const uint32 idx) const extract_non_overlapped_repeats< string_set_type >inline
prefix_uidsextract_non_overlapped_repeats< string_set_type >
seederextract_non_overlapped_repeats< string_set_type >
sequence typedefextract_non_overlapped_repeats< string_set_type >
string_setextract_non_overlapped_repeats< string_set_type >
suffix_uidsextract_non_overlapped_repeats< string_set_type >
super_coordsextract_non_overlapped_repeats< string_set_type >
super_prefix_global_idsextract_non_overlapped_repeats< string_set_type >
super_suffix_global_idsextract_non_overlapped_repeats< string_set_type >
uid_offsetextract_non_overlapped_repeats< string_set_type >