extract_non_overlapped_repeats< string_set_type > Member List

This is the complete list of members for extract_non_overlapped_repeats< string_set_type >, including all inherited members.

adj_extraction_offsets	extract_non_overlapped_repeats< string_set_type >
chain_offsets	extract_non_overlapped_repeats< string_set_type >
chain_overlaps	extract_non_overlapped_repeats< string_set_type >
extract_non_overlapped_repeats(const string_set_type _string_set, const SequenceSetKmerCoord *_chain_coords, const uint32 *_chain_pref_gids, const uint32 *_chain_suffix_gids, const uint32 *_chain_offsets, const uint32 *_adj_extraction_offsets, const uint32 *_chain_overlaps, const uint32 _kmer_size, const uint32 _uid_offset, SequenceSetKmerCoord *_kmers_out, uint32 *_prefix_uids, uint32 *_suffix_uids)	extract_non_overlapped_repeats< string_set_type >	inline
kmer_size	extract_non_overlapped_repeats< string_set_type >
kmers_out	extract_non_overlapped_repeats< string_set_type >
operator()(const uint32 idx) const	extract_non_overlapped_repeats< string_set_type >	inline
prefix_uids	extract_non_overlapped_repeats< string_set_type >
seeder	extract_non_overlapped_repeats< string_set_type >
sequence typedef	extract_non_overlapped_repeats< string_set_type >
string_set	extract_non_overlapped_repeats< string_set_type >
suffix_uids	extract_non_overlapped_repeats< string_set_type >
super_coords	extract_non_overlapped_repeats< string_set_type >
super_prefix_global_ids	extract_non_overlapped_repeats< string_set_type >
super_suffix_global_ids	extract_non_overlapped_repeats< string_set_type >
uid_offset	extract_non_overlapped_repeats< string_set_type >