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nvbio::QGramFilterHost< qgram_index_type, query_iterator, index_iterator > Member List

This is the complete list of members for nvbio::QGramFilterHost< qgram_index_type, query_iterator, index_iterator >, including all inherited members.

coord_type typedefnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
diagonal_type typedefnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
diagonals(const uint32 n_hits, const hits_iterator hits, output_iterator diags, const uint32 interval=1)nvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
hit_type typedefnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
locate(const uint64 begin, const uint64 end, hits_iterator hits)nvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_diagsnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_indicesnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_n_occurrencesnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_n_queriesnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_qgram_indexnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_queriesnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_rangesnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
m_slotsnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
merge(const uint32 interval, const uint32 n_hits, const hits_iterator hits, output_iterator merged_hits, count_iterator merged_counts)nvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
qgram_index_view typedefnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
ranges() const nvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >inline
rank(const qgram_index_type &qgram_index, const uint32 n_queries, const query_iterator queries, const index_iterator indices)nvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >
ranks() const nvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >inline
system_tag typedefnvbio::QGramFilter< host_tag, qgram_index_type, query_iterator, index_iterator >