This is the complete list of members for nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >, including all inherited members.
| aligner_type typedef | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| context | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| context_type typedef | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| job_id | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| queue_slot | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| run(const ScoreStream< stream_type > &score_stream) | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | inline |
| setup(const uint32 _job_id, const uint32 _queue_slot, const stream_type &stream) | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | inline |
| strings | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| strings_type typedef | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| valid | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| window_begin | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | |
| WINDOW_SIZE | nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type > | static |
1.8.4