This is the complete list of members for nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >, including all inherited members.

HammingSubmatrixContext(const checkpoint_type checkpoints, const uint32 checkpoint_id, const submatrix_type submatrix)	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
init(const uint32 j, const uint32 N, column_type &column, const scoring_type &scoring, const score_type zero)	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
last_column(const uint32 j, const uint32 M, const uint32 N, const column_type column)	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
m_checkpoint_id	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
m_checkpoints	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
m_submatrix	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
new_cell(const uint32 i, const uint32 N, const uint32 j, const uint32 M, const score_type score, const DirectionVector dir)	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
previous_column(const uint32 j, const uint32 N, const column_type column)	nvbio::aln::priv::HammingSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline