nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type > Member List

This is the complete list of members for nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >, including all inherited members.

GotohSubmatrixContext(const checkpoint_type checkpoints, const uint32 checkpoint_id, submatrix_type submatrix)	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
init(const uint32 i, H_band_type &H_band, F_band_type &F_band, const scoring_type &scoring, const score_type infimum)	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
last_row(const uint32 i, const H_band_type &H_band, const F_band_type &F_band)	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
m_checkpoint_id	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
m_checkpoints	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
m_submatrix	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
new_cell(const uint32 i, const uint32 j, const score_type score, const DirectionVector hdir, const DirectionVector edir, const DirectionVector fdir)	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline
previous_row(const uint32 i, const H_band_type &H_band, const F_band_type &F_band)	nvbio::aln::priv::banded::GotohSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >	inline