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nvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type > Member List

This is the complete list of members for nvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >, including all inherited members.

init(const uint32 i, band_type &band, const scoring_type &scoring, const score_type infimum)nvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >inline
last_row(const uint32 i, const band_type &band)nvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >inline
m_checkpoint_idnvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
m_checkpointsnvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
m_submatrixnvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >
new_cell(const uint32 i, const uint32 j, const score_type score, const DirectionVector dir)nvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >inline
previous_row(const uint32 i, const band_type &band)nvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >inline
SmithWatermanSubmatrixContext(const checkpoint_type checkpoints, const uint32 checkpoint_id, submatrix_type submatrix)nvbio::aln::priv::banded::SmithWatermanSubmatrixContext< BAND_LEN, TYPE, CHECKPOINTS, checkpoint_type, submatrix_type >inline