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nvbio::alndiff::AlignmentPair Member List

This is the complete list of members for nvbio::alndiff::AlignmentPair, including all inherited members.

AlignmentPair()nvbio::alndiff::AlignmentPairinline
AlignmentPair(const Alignment m1, const Alignment m2)nvbio::alndiff::AlignmentPairinline
dels() const nvbio::alndiff::AlignmentPairinline
ed() const nvbio::alndiff::AlignmentPairinline
has_second() const nvbio::alndiff::AlignmentPairinline
ins() const nvbio::alndiff::AlignmentPairinline
is_ambiguous_paired() const nvbio::alndiff::AlignmentPairinline
is_mapped() const nvbio::alndiff::AlignmentPairinline
is_mapped_paired() const nvbio::alndiff::AlignmentPairinline
is_mapped_unpaired() const nvbio::alndiff::AlignmentPairinline
is_unique_paired() const nvbio::alndiff::AlignmentPairinline
mapped_read_bases() const nvbio::alndiff::AlignmentPairinline
mapped_ref_bases() const nvbio::alndiff::AlignmentPairinline
mapQ() const nvbio::alndiff::AlignmentPairinline
mate1nvbio::alndiff::AlignmentPair
mate2nvbio::alndiff::AlignmentPair
n_gape() const nvbio::alndiff::AlignmentPairinline
n_gapo() const nvbio::alndiff::AlignmentPairinline
n_mm() const nvbio::alndiff::AlignmentPairinline
operator[](const uint32 i) const nvbio::alndiff::AlignmentPairinline
read_id() const nvbio::alndiff::AlignmentPairinline
read_len() const nvbio::alndiff::AlignmentPairinline
score() const nvbio::alndiff::AlignmentPairinline
sec_score() const nvbio::alndiff::AlignmentPairinline
subs() const nvbio::alndiff::AlignmentPairinline
trimmed() const nvbio::alndiff::AlignmentPairinline
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