| al_stats | nvbio::alndiff::PEAnalyzer | |
| ambiguous | nvbio::alndiff::PEAnalyzer | |
| ambiguous_L_not_R_by_mapQ | nvbio::alndiff::PEAnalyzer | |
| ambiguous_R_not_L_by_mapQ | nvbio::alndiff::PEAnalyzer | |
| different_ref() const | nvbio::alndiff::PEAnalyzer | inline |
| discordant() const | nvbio::alndiff::PEAnalyzer | inline |
| discordant_stats | nvbio::alndiff::PEAnalyzer | |
| distant() const | nvbio::alndiff::PEAnalyzer | inline |
| distant_stats | nvbio::alndiff::PEAnalyzer | |
| filtered() const | nvbio::alndiff::PEAnalyzer | inline |
| flush() | nvbio::alndiff::PEAnalyzer | inline |
| generate_report(const char *aln_file_nameL, const char *aln_file_nameR, const char *report) | nvbio::alndiff::PEAnalyzer | |
| m_filter | nvbio::alndiff::PEAnalyzer | |
| m_id_check | nvbio::alndiff::PEAnalyzer | |
| mapped | nvbio::alndiff::PEAnalyzer | |
| mismatched() const | nvbio::alndiff::PEAnalyzer | inline |
| n | nvbio::alndiff::PEAnalyzer | |
| n_different_ref | nvbio::alndiff::PEAnalyzer | |
| n_different_ref1 | nvbio::alndiff::PEAnalyzer | |
| n_different_ref12 | nvbio::alndiff::PEAnalyzer | |
| n_different_ref2 | nvbio::alndiff::PEAnalyzer | |
| n_different_ref_not_ambiguous | nvbio::alndiff::PEAnalyzer | |
| n_different_ref_unique | nvbio::alndiff::PEAnalyzer | |
| n_discordant | nvbio::alndiff::PEAnalyzer | |
| n_discordant1 | nvbio::alndiff::PEAnalyzer | |
| n_discordant12 | nvbio::alndiff::PEAnalyzer | |
| n_discordant2 | nvbio::alndiff::PEAnalyzer | |
| n_discordant_not_ambiguous | nvbio::alndiff::PEAnalyzer | |
| n_discordant_unique | nvbio::alndiff::PEAnalyzer | |
| n_distant | nvbio::alndiff::PEAnalyzer | |
| n_distant1 | nvbio::alndiff::PEAnalyzer | |
| n_distant12 | nvbio::alndiff::PEAnalyzer | |
| n_distant2 | nvbio::alndiff::PEAnalyzer | |
| n_distant_not_ambiguous | nvbio::alndiff::PEAnalyzer | |
| n_distant_unique | nvbio::alndiff::PEAnalyzer | |
| n_mismatched | nvbio::alndiff::PEAnalyzer | |
| not_ambiguous | nvbio::alndiff::PEAnalyzer | |
| paired | nvbio::alndiff::PEAnalyzer | |
| paired_L_not_R_by_mapQ | nvbio::alndiff::PEAnalyzer | |
| paired_R_not_L_by_mapQ | nvbio::alndiff::PEAnalyzer | |
| PEAnalyzer(Filter &filter, const bool id_check) | nvbio::alndiff::PEAnalyzer | |
| push(const AlignmentPair &alnL, const AlignmentPair &alnR) | nvbio::alndiff::PEAnalyzer | |
| sec_ed_by_ed_l | nvbio::alndiff::PEAnalyzer | |
| sec_ed_by_ed_r | nvbio::alndiff::PEAnalyzer | |
| sec_score_by_score_l | nvbio::alndiff::PEAnalyzer | |
| sec_score_by_score_r | nvbio::alndiff::PEAnalyzer | |
| unique | nvbio::alndiff::PEAnalyzer | |
| unique_L_not_R_by_mapQ | nvbio::alndiff::PEAnalyzer | |
| unique_R_not_L_by_mapQ | nvbio::alndiff::PEAnalyzer | |
1.8.4