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nvbio::bowtie2::cuda::EditDistanceScoringScheme Member List

This is the complete list of members for nvbio::bowtie2::cuda::EditDistanceScoringScheme, including all inherited members.

aligner_tag typedefnvbio::bowtie2::cuda::EditDistanceScoringScheme
EditDistanceScoringScheme()nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
end_to_end_aligner() const nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
end_to_end_aligner_type typedefnvbio::bowtie2::cuda::EditDistanceScoringScheme
inf_scorenvbio::bowtie2::cuda::EditDistanceScoringSchemestatic
local_aligner() const nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
local_aligner_type typedefnvbio::bowtie2::cuda::EditDistanceScoringScheme
m_score_minnvbio::bowtie2::cuda::EditDistanceScoringScheme
min_score(const uint32 len) const nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
perfect_score(const uint32 read_len) const nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
scheme_type typedefnvbio::bowtie2::cuda::EditDistanceScoringScheme
threshold_score() const nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
threshold_score_type typedefnvbio::bowtie2::cuda::EditDistanceScoringScheme
ungapped_end_to_end_aligner() const nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
ungapped_end_to_end_aligner_type typedefnvbio::bowtie2::cuda::EditDistanceScoringScheme
ungapped_local_aligner() const nvbio::bowtie2::cuda::EditDistanceScoringSchemeinline
ungapped_local_aligner_type typedefnvbio::bowtie2::cuda::EditDistanceScoringScheme
worst_scorenvbio::bowtie2::cuda::EditDistanceScoringSchemestatic
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