alloc_deque(const uint32 read_id, const uint32 size) | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
erase(const uint32 read_id) | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | inline |
get_data(const uint32 read_id) const | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | inline |
get_deque(const uint32 read_id, bool build_heap=false) const | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
get_probs(const uint32 read_id) const | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | inline |
get_size(const uint32 read_id) const | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | inline |
hit_deque_type typedef | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
hit_vector_type typedef | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
hits_storage_type typedef | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
index_storage_type typedef | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
m_counts | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
m_hits | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
m_index | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
m_pool | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
m_probs | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
m_probs_index | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
m_probs_pool | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
operator[](const uint32 read_id) | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
prob_storage_type typedef | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
reference typedef | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |
resize_deque(const uint32 read_id, const uint32 size) | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | inline |
SeedHitDequeArrayDeviceView(index_storage_type counts=index_storage_type(), index_storage_type index=index_storage_type(), hits_storage_type hits=hits_storage_type(), index_storage_type probs_index=index_storage_type(), prob_storage_type probs=prob_storage_type(), index_storage_type pool=index_storage_type(), index_storage_type probs_pool=index_storage_type()) | nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView | |