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nvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme > Member List

This is the complete list of members for nvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >, including all inherited members.

cigarnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
cigar_coordsnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
dp_buffernvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
dp_buffer_sizenvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
genomenvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
genome_iterator typedefnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
genome_lengthnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
get_reads(const uint32 mate) const nvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >inline
mdsnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
read_batch_type typedefnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
readsnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
reads_onvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
scheme_type typedefnvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
scoring_schemenvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >
TracebackPipelineState(const read_batch_type _reads1, const read_batch_type _reads2, const uint32 _genome_len, const genome_iterator _genome, const ScoringScheme _scoring_scheme, Aligner &_aligner)nvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >inline
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