This is the complete list of members for nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >, including all inherited members.
| aligner() const | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | inline |
| aligner_type typedef | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | |
| AlignmentStreamBase(const PipelineType _pipeline, const aligner_type _aligner, const ParamsPOD _params) | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | inline |
| load_strings(const uint32 i, const uint32 window_begin, const uint32 window_end, const context_type *context, strings_type *strings) const | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | inline |
| m_aligner | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | |
| m_params | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | |
| m_pipeline | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | |
| pattern_length(const uint32 i, const context_type *context) const | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | inline |
| scheme_type typedef | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | |
| strings_type typedef | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | |
| text_length(const uint32 i, const context_type *context) const | nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType > | inline |
1.8.4