nvbio::io::Alignment Member List

This is the complete list of members for nvbio::io::Alignment, including all inherited members.

Alignment()	nvbio::io::Alignment	inline
Alignment(const uint32 pos, const uint32 ed, const int32 score, const uint32 rc, const uint32 mate=0, const bool paired=false, const bool discordant=false)	nvbio::io::Alignment	inline
alignment() const	nvbio::io::Alignment	inline
ed() const	nvbio::io::Alignment	inline
invalid()	nvbio::io::Alignment	inlinestatic
is_aligned() const	nvbio::io::Alignment	inline
is_concordant() const	nvbio::io::Alignment	inline
is_discordant() const	nvbio::io::Alignment	inline
is_paired() const	nvbio::io::Alignment	inline
is_rc() const	nvbio::io::Alignment	inline
is_unpaired() const	nvbio::io::Alignment	inline
m_align	nvbio::io::Alignment
m_discordant	nvbio::io::Alignment
m_ed	nvbio::io::Alignment
m_mate	nvbio::io::Alignment
m_paired	nvbio::io::Alignment
m_rc	nvbio::io::Alignment
m_score	nvbio::io::Alignment
m_score_sgn	nvbio::io::Alignment
mate() const	nvbio::io::Alignment	inline
max_ed()	nvbio::io::Alignment	inlinestatic
max_score()	nvbio::io::Alignment	inlinestatic
min_score()	nvbio::io::Alignment	inlinestatic
score() const	nvbio::io::Alignment	inline
sink() const	nvbio::io::Alignment	inline