nvbio::io::BestPairedAlignments Member List

This is the complete list of members for nvbio::io::BestPairedAlignments, including all inherited members.

alignment() const	nvbio::io::BestPairedAlignments	inline
alignment()	nvbio::io::BestPairedAlignments	inline
alignment_pos() const	nvbio::io::BestPairedAlignments	inline
anchor() const	nvbio::io::BestPairedAlignments	inline
anchor_ed() const	nvbio::io::BestPairedAlignments	inline
anchor_mate() const	nvbio::io::BestPairedAlignments	inline
anchor_score() const	nvbio::io::BestPairedAlignments	inline
best_alignment_pos() const	nvbio::io::BestPairedAlignments	inline
best_anchor() const	nvbio::io::BestPairedAlignments	inline
best_ed() const	nvbio::io::BestPairedAlignments	inline
best_opposite() const	nvbio::io::BestPairedAlignments	inline
best_score() const	nvbio::io::BestPairedAlignments	inline
BestPairedAlignments()	nvbio::io::BestPairedAlignments	inline
BestPairedAlignments(const BestAlignments &a, const BestAlignments &o)	nvbio::io::BestPairedAlignments	inline
BestPairedAlignments(const BestAlignments &a)	nvbio::io::BestPairedAlignments	inline
ed() const	nvbio::io::BestPairedAlignments	inline
has_second() const	nvbio::io::BestPairedAlignments	inline
has_second_paired() const	nvbio::io::BestPairedAlignments	inline
has_second_unpaired() const	nvbio::io::BestPairedAlignments	inline
is_aligned() const	nvbio::io::BestPairedAlignments	inline
is_aligned() const	nvbio::io::BestPairedAlignments	inline
is_opposite_rc() const	nvbio::io::BestPairedAlignments	inline
is_paired() const	nvbio::io::BestPairedAlignments	inline
is_rc() const	nvbio::io::BestPairedAlignments	inline
m_a1	nvbio::io::BestPairedAlignments
m_a2	nvbio::io::BestPairedAlignments
m_o1	nvbio::io::BestPairedAlignments
m_o2	nvbio::io::BestPairedAlignments
mate(const uint32 m) const	nvbio::io::BestPairedAlignments	inline
opposite() const	nvbio::io::BestPairedAlignments	inline
opposite_alignment() const	nvbio::io::BestPairedAlignments	inline
opposite_alignment()	nvbio::io::BestPairedAlignments	inline
opposite_alignment_pos() const	nvbio::io::BestPairedAlignments	inline
opposite_ed() const	nvbio::io::BestPairedAlignments	inline
opposite_mate() const	nvbio::io::BestPairedAlignments	inline
opposite_score() const	nvbio::io::BestPairedAlignments	inline
pair() const	nvbio::io::BestPairedAlignments	inline
score() const	nvbio::io::BestPairedAlignments	inline
second_alignment_pos() const	nvbio::io::BestPairedAlignments	inline
second_ed() const	nvbio::io::BestPairedAlignments	inline
second_score() const	nvbio::io::BestPairedAlignments	inline