nvbio::io::ReadDataFile_SAM Member List

This is the complete list of members for nvbio::io::ReadDataFile_SAM, including all inherited members.

FILE_EOF enum value	nvbio::io::ReadDataFile
FILE_NOT_READY enum value	nvbio::io::ReadDataFile
FILE_OK enum value	nvbio::io::ReadDataFile
FILE_OPEN_FAILED enum value	nvbio::io::ReadDataFile
FILE_PARSE_ERROR enum value	nvbio::io::ReadDataFile
FILE_STREAM_ERROR enum value	nvbio::io::ReadDataFile
FileState enum name	nvbio::io::ReadDataFile
init(void)	nvbio::io::ReadDataFile_SAM
is_ok(void)	nvbio::io::ReadDataFile	inlinevirtual
LINE_BUFFER_INIT_SIZE enum value	nvbio::io::ReadDataFile_SAM
LONG_READ	nvbio::io::ReadDataFile	static
m_file_state	nvbio::io::ReadDataFile	protected
m_flags	nvbio::io::ReadDataFile	protected
m_loaded	nvbio::io::ReadDataFile	protected
m_max_reads	nvbio::io::ReadDataFile	protected
m_truncate_read_len	nvbio::io::ReadDataStream
next(const uint32 batch_size, const uint32 batch_bps)	nvbio::io::ReadDataFile	virtual
nextChunk(ReadDataRAM *output, uint32 max_reads, uint32 max_bps)	nvbio::io::ReadDataFile_SAM	virtual
ReadDataFile(const uint32 max_reads, const uint32 truncate_read_len, const ReadEncoding flags)	nvbio::io::ReadDataFile	inlineprotected
ReadDataFile_SAM(const char *read_file_name, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags)	nvbio::io::ReadDataFile_SAM
ReadDataStream(uint32 truncate_read_len=uint32(-1))	nvbio::io::ReadDataStream	inline
SortOrder enum name	nvbio::io::ReadDataFile_SAM
SortOrder_coordinate enum value	nvbio::io::ReadDataFile_SAM
SortOrder_queryname enum value	nvbio::io::ReadDataFile_SAM
SortOrder_unknown enum value	nvbio::io::ReadDataFile_SAM
SortOrder_unsorted enum value	nvbio::io::ReadDataFile_SAM
sq_lengths	nvbio::io::ReadDataFile_SAM
sq_names	nvbio::io::ReadDataFile_SAM
~ReadDataFile()	nvbio::io::ReadDataFile	inlinevirtual
~ReadDataStream()	nvbio::io::ReadDataStream	inlinevirtual