| FILE_EOF enum value | nvbio::io::ReadDataFile | |
| FILE_NOT_READY enum value | nvbio::io::ReadDataFile | |
| FILE_OK enum value | nvbio::io::ReadDataFile | |
| FILE_OPEN_FAILED enum value | nvbio::io::ReadDataFile | |
| FILE_PARSE_ERROR enum value | nvbio::io::ReadDataFile | |
| FILE_STREAM_ERROR enum value | nvbio::io::ReadDataFile | |
| FileState enum name | nvbio::io::ReadDataFile | |
| fillBuffer(void) | nvbio::io::ReadDataFile_TXT_gz | virtual |
| is_ok(void) | nvbio::io::ReadDataFile | inlinevirtual |
| LONG_READ | nvbio::io::ReadDataFile | static |
| m_buffer | nvbio::io::ReadDataFile_TXT | protected |
| m_buffer_pos | nvbio::io::ReadDataFile_TXT | protected |
| m_buffer_size | nvbio::io::ReadDataFile_TXT | protected |
| m_error_char | nvbio::io::ReadDataFile_TXT | protected |
| m_file_name | nvbio::io::ReadDataFile_TXT | protected |
| m_file_state | nvbio::io::ReadDataFile | protected |
| m_flags | nvbio::io::ReadDataFile | protected |
| m_line | nvbio::io::ReadDataFile_TXT | protected |
| m_loaded | nvbio::io::ReadDataFile | protected |
| m_max_reads | nvbio::io::ReadDataFile | protected |
| m_name | nvbio::io::ReadDataFile_TXT | protected |
| m_quality_encoding | nvbio::io::ReadDataFile_TXT | protected |
| m_read_bp | nvbio::io::ReadDataFile_TXT | protected |
| m_read_q | nvbio::io::ReadDataFile_TXT | protected |
| m_truncate_read_len | nvbio::io::ReadDataStream | |
| next(const uint32 batch_size, const uint32 batch_bps) | nvbio::io::ReadDataFile | virtual |
| nextChunk(ReadDataRAM *output, uint32 max_reads, uint32 max_bps) | nvbio::io::ReadDataFile_TXT | protectedvirtual |
| ReadDataFile(const uint32 max_reads, const uint32 truncate_read_len, const ReadEncoding flags) | nvbio::io::ReadDataFile | inlineprotected |
| ReadDataFile_TXT(const char *read_file_name, const QualityEncoding quality_encoding, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags, const uint32 buffer_size=64536u) | nvbio::io::ReadDataFile_TXT | inlineprotected |
| ReadDataFile_TXT_gz(const char *read_file_name, const QualityEncoding qualities, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags, const uint32 buffer_size=64536u) | nvbio::io::ReadDataFile_TXT_gz | |
| ReadDataStream(uint32 truncate_read_len=uint32(-1)) | nvbio::io::ReadDataStream | inline |
| ~ReadDataFile() | nvbio::io::ReadDataFile | inlinevirtual |
| ~ReadDataStream() | nvbio::io::ReadDataStream | inlinevirtual |
1.8.4