| avg_read_len() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| bps() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| COMPLEMENT_OP enum value | nvbio::io::ReadDataRAM | |
| const_index_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_name_index() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_name_storage_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_name_stream() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_name_string_set() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_name_string_set_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_plain_view_type typedef | nvbio::io::ReadData | |
| const_qual_storage_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_qual_stream() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_qual_string_set() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_qual_string_set_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_read_index() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_read_storage_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_read_stream() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_read_stream_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_read_stream_storage() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_read_stream_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_read_string typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| const_read_string_set() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| const_read_string_set_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| end_batch(void) | nvbio::io::ReadDataRAM | |
| get_range(const uint32 i) const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| get_read(const uint32 i) | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| get_read(const uint32 i) const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| HI_BITS | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | static |
| index_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_avg_read_len | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_max_read_len | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_min_read_len | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_n_reads | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_name_index | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_name_index_vec | nvbio::io::ReadDataRAM | |
| m_name_stream | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_name_stream_len | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_name_vec | nvbio::io::ReadDataRAM | |
| m_qual_stream | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_qual_vec | nvbio::io::ReadDataRAM | |
| m_read_index | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_read_index_vec | nvbio::io::ReadDataRAM | |
| m_read_stream | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_read_stream_len | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_read_stream_words | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| m_read_vec | nvbio::io::ReadDataRAM | |
| max_read_len() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| min_read_len() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_index() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_index() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_storage_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| name_stream() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_stream() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_stream_len() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_string_set() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_string_set() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| name_string_set_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| NO_OP enum value | nvbio::io::ReadDataRAM | |
| plain_view_type typedef | nvbio::io::ReadData | |
| push_back(uint32 read_len, const char *name, const uint8 *base_pairs, const uint8 *quality, const QualityEncoding quality_encoding, const uint32 truncate_read_len, const StrandOp conversion_flags) | nvbio::io::ReadDataRAM | |
| qual_storage_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| qual_stream() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| qual_stream() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| qual_string_set() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| qual_string_set() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| qual_string_set_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| READ_BIG_ENDIAN | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | static |
| READ_BITS | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | static |
| read_index() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_index() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_storage_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| read_stream() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_stream() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_stream_iterator typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| read_stream_storage() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_stream_storage() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_stream_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| read_string typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| read_string_set() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_string_set() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| read_string_set_type typedef | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | |
| READ_SYMBOLS_PER_WORD | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | static |
| ReadData() | nvbio::io::ReadData | inline |
| ReadDataRAM() | nvbio::io::ReadDataRAM | |
| ReadDataView() | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| ReadDataView(const ReadDataView< InIndexIterator, InReadIterator, InQualIterator, InNameIterator > &in) | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| reserve(const uint32 n_reads, const uint32 n_bps) | nvbio::io::ReadDataRAM | |
| REVERSE_COMPLEMENT_OP enum value | nvbio::io::ReadDataRAM | |
| REVERSE_OP enum value | nvbio::io::ReadDataRAM | |
| size() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| StrandOp enum name | nvbio::io::ReadDataRAM | |
| words() const | nvbio::io::ReadDataView< IndexIterator, ReadStorageIterator, QualStorageIterator, NameStorageIterator > | inline |
| ~ReadData() | nvbio::io::ReadData | inlinevirtual |
1.8.4