This is the complete list of members for nvbio::io::SamOutput, including all inherited members.
| alignment_type | nvbio::io::OutputFile | protected |
| bnt | nvbio::io::OutputFile | protected |
| close(void) | nvbio::io::SamOutput | virtual |
| configure_mapq_evaluator(int mapq_filter) | nvbio::io::OutputFile | virtual |
| file_name | nvbio::io::OutputFile | protected |
| get_aggregate_statistics(void) | nvbio::io::OutputFile | virtual |
| header() | nvbio::io::SamOutput | inlinevirtual |
| iostats | nvbio::io::OutputFile | protected |
| mapq_filter | nvbio::io::OutputFile | protected |
| open(const char *file_name, AlignmentType aln_type, BNT bnt) | nvbio::io::OutputFile | static |
| OutputFile(const char *file_name, AlignmentType alignment_type, BNT bnt) | nvbio::io::OutputFile | protected |
| pg_args | nvbio::io::OutputFile | protected |
| pg_id | nvbio::io::OutputFile | protected |
| pg_name | nvbio::io::OutputFile | protected |
| pg_version | nvbio::io::OutputFile | protected |
| process(struct HostOutputBatchSE &batch) | nvbio::io::SamOutput | virtual |
| process(struct HostOutputBatchPE &batch) | nvbio::io::SamOutput | virtual |
| rg_id | nvbio::io::OutputFile | protected |
| rg_string | nvbio::io::OutputFile | protected |
| SamOutput(const char *file_name, AlignmentType alignment_type, BNT bnt) | nvbio::io::SamOutput | |
| set_program(const char *_pg_id, const char *_pg_name, const char *_pg_version, const char *_pg_args) | nvbio::io::OutputFile | inline |
| set_rg(const char *_rg_id, const char *_rg_string) | nvbio::io::OutputFile | inline |
| write_tag(const char *name, const char *value) | nvbio::io::SamOutput | |
| ~OutputFile() | nvbio::io::OutputFile | virtual |
| ~SamOutput() | nvbio::io::SamOutput | |
1.8.4