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nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT > Member List

This is the complete list of members for nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >, including all inherited members.

avg_sequence_len() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
bps() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
get_name(const uint32 i) const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
get_quals(const uint32 i) const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
get_range(const uint32 i) const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
get_read(const uint32 i) const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
index_iterator typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
m_datanvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
max_sequence_len() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
min_sequence_len() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
name_index() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
name_storage_iterator typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
name_stream() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
name_stream_len() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
name_string typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
name_string_set() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
name_string_set_type typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
qual_storage_iterator typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
qual_stream() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
qual_string typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
qual_string_set() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
qual_string_set_type typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
SEQUENCE_ALPHABETnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >static
SEQUENCE_BIG_ENDIANnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >static
SEQUENCE_BITSnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >static
sequence_index() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
sequence_reference typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_storage() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
sequence_storage_iterator typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_stream() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
sequence_stream_type typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_string typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_string_set() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
sequence_string_set_type typedefnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
SEQUENCE_SYMBOLS_PER_WORDnvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >static
SequenceDataAccess(const SequenceDataT &data)nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
size() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline
words() const nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >inline