nvbio::io::SequenceDataStorage< system_tag > Member List

This is the complete list of members for nvbio::io::SequenceDataStorage< system_tag >, including all inherited members.

alphabet() const	nvbio::io::SequenceDataInfo	inline
avg_sequence_len() const	nvbio::io::SequenceDataInfo	inline
bps() const	nvbio::io::SequenceDataInfo	inline
const_index_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
const_name_storage_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
const_plain_view_type typedef	nvbio::io::SequenceDataStorage< system_tag >
const_qual_storage_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
const_sequence_storage_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
has_qualities() const	nvbio::io::SequenceDataInfo	inline
index_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
m_alphabet	nvbio::io::SequenceDataInfo
m_avg_sequence_len	nvbio::io::SequenceDataInfo
m_has_qualities	nvbio::io::SequenceDataInfo
m_max_sequence_len	nvbio::io::SequenceDataInfo
m_min_sequence_len	nvbio::io::SequenceDataInfo
m_n_seqs	nvbio::io::SequenceDataInfo
m_name_index_vec	nvbio::io::SequenceDataStorage< system_tag >
m_name_stream_len	nvbio::io::SequenceDataInfo
m_name_vec	nvbio::io::SequenceDataStorage< system_tag >
m_qual_vec	nvbio::io::SequenceDataStorage< system_tag >
m_sequence_index_vec	nvbio::io::SequenceDataStorage< system_tag >
m_sequence_stream_len	nvbio::io::SequenceDataInfo
m_sequence_stream_words	nvbio::io::SequenceDataInfo
m_sequence_vec	nvbio::io::SequenceDataStorage< system_tag >
max_sequence_len() const	nvbio::io::SequenceDataInfo	inline
min_sequence_len() const	nvbio::io::SequenceDataInfo	inline
name_index()	nvbio::io::SequenceDataStorage< system_tag >	inline
name_index() const	nvbio::io::SequenceDataStorage< system_tag >	inline
name_storage_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
name_stream()	nvbio::io::SequenceDataStorage< system_tag >	inline
name_stream() const	nvbio::io::SequenceDataStorage< system_tag >	inline
name_stream_len() const	nvbio::io::SequenceDataInfo	inline
operator const_plain_view_type() const	nvbio::io::SequenceDataStorage< system_tag >	inlinevirtual
operator plain_view_type()	nvbio::io::SequenceDataStorage< system_tag >	inlinevirtual
operator=(const SequenceDataStorage< other_tag > &other)	nvbio::io::SequenceDataStorage< system_tag >	inline
operator=(const SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator > &other)	nvbio::io::SequenceDataStorage< system_tag >	inline
plain_view_type typedef	nvbio::io::SequenceDataStorage< system_tag >
qs() const	nvbio::io::SequenceDataInfo	inline
qual_storage_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
qual_stream()	nvbio::io::SequenceDataStorage< system_tag >	inline
qual_stream() const	nvbio::io::SequenceDataStorage< system_tag >	inline
reserve(const uint32 n_seqs, const uint32 n_bps)	nvbio::io::SequenceDataStorage< system_tag >	inline
sequence_index()	nvbio::io::SequenceDataStorage< system_tag >	inline
sequence_index() const	nvbio::io::SequenceDataStorage< system_tag >	inline
sequence_storage()	nvbio::io::SequenceDataStorage< system_tag >	inline
sequence_storage() const	nvbio::io::SequenceDataStorage< system_tag >	inline
sequence_storage_iterator typedef	nvbio::io::SequenceDataStorage< system_tag >
SequenceDataBase typedef	nvbio::io::SequenceDataStorage< system_tag >
SequenceDataInfo()	nvbio::io::SequenceDataInfo	inline
SequenceDataStorage()	nvbio::io::SequenceDataStorage< system_tag >	inline
SequenceDataStorage(const SequenceDataStorage< other_tag > &other)	nvbio::io::SequenceDataStorage< system_tag >	inline
SequenceDataStorage(const SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator > &other)	nvbio::io::SequenceDataStorage< system_tag >	inline
SequenceDataStorage(const SequenceData &other)	nvbio::io::SequenceDataStorage< system_tag >
size() const	nvbio::io::SequenceDataInfo	inline
words() const	nvbio::io::SequenceDataInfo	inline
~SequenceData()	nvbio::io::SequenceData	inlinevirtual