allocated_device_memory() const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
allocated_host_memory() const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
bwt(const uint32 n_suffixes, const uint32 *d_indices, uint8 *h_bwt, uint8 *d_bwt) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
d_suffixes | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | |
d_symbols | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | |
DeviceStringSetRadices() | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
DeviceStringSetRadices(const string_set_type string_set) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
dollar_bwt(const uint32 begin, const uint32 end, uint8 *h_bwt) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
extract(const uint32 n_indices, const uint32 *d_indices, const uint32 word_idx, const uint32 word_block_begin, const uint32 word_block_end, uint32 *d_radices) const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
init(const uint32 n_suffixes, const uint2 *_h_suffixes, const uint2 *_d_suffixes) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
init_slice(const uint32 n_indices, const uint32 *d_indices, const uint32 word_block_begin, const uint32 word_block_end) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
m_string_set | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | |
needed_device_memory(const uint32 n_suffixes) const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
num_words(const uint32 max_string_len) const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
reserve(const uint32 n_suffixes, const uint32 slice_size) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
set(const string_set_type string_set) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |