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nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > Member List

This is the complete list of members for nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >, including all inherited members.

BLOCK_INTERVALnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >static
build_occurrence_table(SymbolIterator begin, SymbolIterator end, IndexType *occ, IndexType *cnt=NULL)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
count_table()nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
count_table() const nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
count_table_type typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
index_type typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
m_count_tablenvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
m_occnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
m_textnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
occ()nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
occ() const nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
occ_iterator typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
range_type typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
rank(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const IndexType i, const uint32 c)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const typename vector_type< IndexType, 2 >::type range, const uint32 c)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank4(const rank_dictionary< 2, K, TextString, OccIterator, CountTable > &dict, const IndexType i)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank4(const rank_dictionary< 2, K, TextString, OccIterator, CountTable > &dict, const uint2 range, uint4 *outl, uint4 *outh)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank4(const rank_dictionary< 2, K, TextString, OccIterator, CountTable > &dict, const uint64_2 range, uint64_4 *outl, uint64_4 *outh)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank_all(const rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable > &dict, const typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::index_type i)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank_all(const rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable > &dict, const typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::index_type i, typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::vector_type *out)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank_all(const rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable > &dict, const typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::range_type range, typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::vector_type *outl, typename rank_dictionary< SYMBOL_SIZE, K, TextString, OccIterator, CountTable >::vector_type *outh)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
rank_dictionary()nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
rank_dictionary(const TextString _text, const OccIterator _occ, const CountTable _count_table)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
symbol_count() const nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
SYMBOL_COUNTnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >static
symbol_size() const nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
SYMBOL_SIZEnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >static
text()nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
text() const nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >inline
text(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const uint32 i)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
text(const rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable > &dict, const uint64 i)nvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >related
text_type typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
vec2_type typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
vec4_type typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >
vector_type typedefnvbio::rank_dictionary< SYMBOL_SIZE_T, K, TextString, OccIterator, CountTable >