bloom_filters.h File Reference

#include "utils.h"
#include <nvbio/basic/numbers.h>
#include <nvbio/basic/threads.h>
#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/vector.h>
#include <nvbio/basic/primitives.h>
#include <nvbio/basic/popcount.h>

Go to the source code of this file.

Classes
struct	BloomFilters< system_tag >
struct	block_occupancy_functor

Enumerations
enum	KmersType { SAMPLED_KMERS = 0, TRUSTED_KMERS = 1 }

Functions
void	merge (BloomFilters< host_tag > *h_bloom_filters, const uint32 device_count, BloomFilters< device_tag > *d_bloom_filters, const KmersType type)
void	merged_stats (const BloomFilters< host_tag > *h_bloom_filters, const uint32 device_count, const BloomFilters< device_tag > *d_bloom_filters, nvbio::vector< host_tag, uint64 > &stats)
template<typename system_tag >
void	compute_bloom_filter_stats (const BloomFilters< system_tag > &bloom_filters, const KmersType type, const uint32 K, float &occupancy, float &approx_size, float &fp)