Detailed description

template< typename system_tag>
struct BloomFilters< system_tag >

Bloom filters container - this class contains all the per-device data needed during nvLighter's execution

Definition at line 67 of file bloom_filters.h.

#include <bloom_filters.h>

Public Methods
bool	setup (const int _device, const uint64 sampled_words, const uint64 trusted_words)

const nvbio::vector < system_tag, uint32 > &	get_kmers (const KmersType type) const

nvbio::vector< system_tag, uint32 > &	get_kmers (const KmersType type)

void	get_kmers (const KmersType type, nvbio::vector< host_tag, uint32 > &bf)

void	set_kmers (const KmersType type, const nvbio::vector< host_tag, uint32 > &bf)

void	set_threshold (const nvbio::vector< host_tag, uint32 > &_threshold)

void	set_device () const

void	device_memory (size_t free_device, size_t total_device) const

Public Members
int	device

nvbio::vector< system_tag, uint32 >	sampled_kmers_storage

nvbio::vector< system_tag, uint32 >	trusted_kmers_storage

nvbio::vector< system_tag, uint32 >	threshold

nvbio::vector< system_tag, uint64 >	stats

Member Function Documentation

template<typename system_tag>

void BloomFilters< system_tag >::device_memory	(	size_t *	free_device,
		size_t *	total_device
	)		const

inline

Definition at line 142 of file bloom_filters.h.

template<typename system_tag>

const nvbio::vector<system_tag,uint32>& BloomFilters< system_tag >::get_kmers ( const KmersType type) const

inline

Definition at line 106 of file bloom_filters.h.

template<typename system_tag>

nvbio::vector<system_tag,uint32>& BloomFilters< system_tag >::get_kmers ( const KmersType type)

inline

Definition at line 111 of file bloom_filters.h.

template<typename system_tag>

void BloomFilters< system_tag >::get_kmers	(	const KmersType	type,
		nvbio::vector< host_tag, uint32 > &	bf
	)

inline

Definition at line 116 of file bloom_filters.h.

template<typename system_tag>

void BloomFilters< system_tag >::set_device ( ) const

inline

Definition at line 137 of file bloom_filters.h.

template<typename system_tag>

void BloomFilters< system_tag >::set_kmers	(	const KmersType	type,
		const nvbio::vector< host_tag, uint32 > &	bf
	)

inline

Definition at line 123 of file bloom_filters.h.

template<typename system_tag>

void BloomFilters< system_tag >::set_threshold ( const nvbio::vector< host_tag, uint32 > & _threshold)

inline

Definition at line 130 of file bloom_filters.h.

template<typename system_tag>

bool BloomFilters< system_tag >::setup	(	const int	_device,
		const uint64	sampled_words,
		const uint64	trusted_words
	)

inline

Definition at line 69 of file bloom_filters.h.

Member Data Documentation

template<typename system_tag>

int BloomFilters< system_tag >::device

Definition at line 100 of file bloom_filters.h.

template<typename system_tag>

nvbio::vector<system_tag,uint32> BloomFilters< system_tag >::sampled_kmers_storage

Definition at line 101 of file bloom_filters.h.

template<typename system_tag>

nvbio::vector<system_tag,uint64> BloomFilters< system_tag >::stats

Definition at line 104 of file bloom_filters.h.

template<typename system_tag>

nvbio::vector<system_tag,uint32> BloomFilters< system_tag >::threshold

Definition at line 103 of file bloom_filters.h.

template<typename system_tag>

nvbio::vector<system_tag,uint32> BloomFilters< system_tag >::trusted_kmers_storage

Definition at line 102 of file bloom_filters.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvLighter/bloom_filters.h

Detailed description

template< typename system_tag> struct BloomFilters< system_tag >

Public Methods

Public Members

Member Function Documentation

Member Data Documentation

template< typename system_tag>
struct BloomFilters< system_tag >