Detailed description

Definition at line 25 of file BamReader.h.

#include <BamReader.h>

Public Methods
	BamReader (void)

	~BamReader (void)

void	Close (void)

bool	Jump (int refID, int position=0)

void	Open (const std::string &filename, const std::string &indexFilename="")

bool	Rewind (void)

bool	GetNextAlignment (BamAlignment &bAlignment)

const std::string	GetHeaderText (void) const

const int	GetReferenceCount (void) const

const BamTools::RefVector	GetReferenceData (void) const

const int	GetReferenceID (const std::string &refName) const

bool	CreateIndex (void)

Constructor & Destructor Documentation

BamReader::BamReader ( void )

Definition at line 125 of file BamReader.cpp.

BamReader::~BamReader ( void )

Definition at line 130 of file BamReader.cpp.

void BamReader::Close ( void )

Definition at line 136 of file BamReader.cpp.

bool BamReader::CreateIndex ( void )

Definition at line 151 of file BamReader.cpp.

const string BamReader::GetHeaderText ( void ) const

Definition at line 145 of file BamReader.cpp.

bool BamReader::GetNextAlignment ( BamAlignment & bAlignment)

Definition at line 142 of file BamReader.cpp.

const int BamReader::GetReferenceCount ( void ) const

Definition at line 146 of file BamReader.cpp.

const RefVector BamReader::GetReferenceData ( void ) const

Definition at line 147 of file BamReader.cpp.

const int BamReader::GetReferenceID ( const std::string & refName) const

Definition at line 148 of file BamReader.cpp.

Definition at line 137 of file BamReader.cpp.

Definition at line 138 of file BamReader.cpp.

bool BamReader::Rewind ( void )

Definition at line 139 of file BamReader.cpp.

The documentation for this class was generated from the following files: