Batch Schedulers

Detailed Description

A Batch Scheduler is a tag specifying the algorithm used to execute a batch of jobs in parallel. Four such algorithms are currently available:

- HostThreadScheduler
- DeviceThreadScheduler (inheriting from DeviceThreadBlockScheduler)
- DeviceStagedThreadScheduler
- DeviceWarpScheduler

Classes
struct	nvbio::aln::HostThreadScheduler
struct	nvbio::aln::DeviceThreadBlockScheduler< BLOCKDIM_T, MINBLOCKS_T >
struct	nvbio::aln::DeviceStagedThreadScheduler
struct	nvbio::aln::DeviceWarpScheduler
struct	nvbio::aln::supports_scheduler< T, Scheduler >
struct	nvbio::aln::supports_scheduler< EditDistanceAligner< TYPE, AlgorithmTag >, HostThreadScheduler >
struct	nvbio::aln::supports_scheduler< EditDistanceAligner< TYPE, AlgorithmTag >, DeviceThreadScheduler >
struct	nvbio::aln::supports_scheduler< EditDistanceAligner< TYPE, AlgorithmTag >, DeviceStagedThreadScheduler >
struct	nvbio::aln::supports_scheduler< EditDistanceAligner< TYPE, AlgorithmTag >, DeviceWarpScheduler >
struct	nvbio::aln::supports_scheduler< SmithWatermanAligner< TYPE, ScoringScheme, AlgorithmTag >, HostThreadScheduler >
struct	nvbio::aln::supports_scheduler< SmithWatermanAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceThreadScheduler >
struct	nvbio::aln::supports_scheduler< SmithWatermanAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceStagedThreadScheduler >
struct	nvbio::aln::supports_scheduler< SmithWatermanAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceWarpScheduler >
struct	nvbio::aln::supports_scheduler< GotohAligner< TYPE, ScoringScheme, AlgorithmTag >, HostThreadScheduler >
struct	nvbio::aln::supports_scheduler< GotohAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceThreadScheduler >
struct	nvbio::aln::supports_scheduler< GotohAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceStagedThreadScheduler >
struct	nvbio::aln::supports_scheduler< GotohAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceWarpScheduler >
struct	nvbio::aln::supports_scheduler< HammingDistanceAligner< TYPE, ScoringScheme, AlgorithmTag >, HostThreadScheduler >
struct	nvbio::aln::supports_scheduler< HammingDistanceAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceThreadScheduler >
struct	nvbio::aln::supports_scheduler< HammingDistanceAligner< TYPE, ScoringScheme, AlgorithmTag >, DeviceStagedThreadScheduler >

Typedefs
typedef DeviceThreadBlockScheduler< 128, 1 >	nvbio::aln::DeviceThreadScheduler

Typedef Documentation

typedef DeviceThreadBlockScheduler<128,1> nvbio::aln::DeviceThreadScheduler

Identify a staged thread-parallel batch scheduling algorithm

Definition at line 68 of file batched.h.