Utils

Detailed Description

Classes
struct	nvbio::ReverseXform< IndexType >
struct	nvbio::OffsetXform< IndexType >
struct	nvbio::quality_nop
struct	nvbio::ReadStreamQualities< ReadStreamType >
struct	nvbio::ReadStream< StreamType, QualType >
struct	nvbio::ReadLoader< SequenceDataT, Tag >
struct	nvbio::SequenceStreamLoader< SequenceDataT, Tag >

Enumerations
enum	nvbio::ReadType { nvbio::STANDARD = 0u, nvbio::COMPLEMENT = 1u }
enum	nvbio::DirType { nvbio::FORWARD = 0u, nvbio::REVERSE = 1u }

Functions
template<typename StreamType , typename QualType >
NVBIO_HOST_DEVICE NVBIO_FORCEINLINE uint32	nvbio::length (const ReadStream< StreamType, QualType > &read)

Enumeration Type Documentation

enum nvbio::DirType

Enumerator
FORWARD
REVERSE

Definition at line 46 of file utils.h.

enum nvbio::ReadType

Enumerator
STANDARD
COMPLEMENT

Definition at line 45 of file utils.h.

Function Documentation

template<typename StreamType , typename QualType >

NVBIO_HOST_DEVICE NVBIO_FORCEINLINE uint32 nvbio::length

(

const ReadStream< StreamType, QualType > &

read)

return string length

Definition at line 270 of file utils.h.