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NVBIO
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NVBIO
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#include <stdio.h>#include <stdlib.h>#include <string.h>#include <nvbio/basic/types.h>#include <nvbio/basic/console.h>#include <cuda_runtime_api.h>Go to the source code of this file.
Namespaces | |
| nvbio | |
| Define a vector_view POD type and plain_view() for std::vector. | |
| nvbio::cuda | |
| nvbio::aln | |
| nvbio::html | |
Enumerations | |
| enum | Tests { kStringSet = 1u, kScan = 2u, kSumTree = 16u, kHTML = 32u, kCache = 64u, kPackedStream = 128u, kBWT = 256u, kFMIndex = 512u, kAlloc = 1024u, kSyncblocks = 2048u, kCondition = 4096u, kWorkQueue = 8192u, kAlignment = 16384u, kRank = 32768u, kQGram = 65536u, kSequence = 131072u, kWaveletTree = 262144u, kBloomFilter = 524288u, kALL = 0xFFFFFFFFu } |
Functions | |
| int | cache_test () |
| int | packedstream_test () |
| int | bwt_test () |
| int | fmindex_test (int argc, char *argv[]) |
| int | fastq_test (const char *filename) |
| void | crcInit () |
| int | nvbio::alloc_test () |
| int | nvbio::syncblocks_test () |
| int | nvbio::condition_test () |
| int | nvbio::rank_test (int argc, char *argv[]) |
| int | nvbio::work_queue_test (int argc, char *argv[]) |
| int | nvbio::string_set_test (int argc, char *argv[]) |
| int | nvbio::sum_tree_test () |
| int | nvbio::qgram_test (int argc, char *argv[]) |
| int | nvbio::sequence_test (int argc, char *argv[]) |
| int | nvbio::wavelet_test (int argc, char *argv[]) |
| int | nvbio::bloom_filter_test (int argc, char *argv[]) |
| void | nvbio::cuda::scan_test () |
| void | nvbio::aln::test (int argc, char *argv[]) |
| void | nvbio::html::test () |
| int | main (int argc, char *argv[]) |
| enum Tests |
| Enumerator | |
|---|---|
| kStringSet | |
| kScan | |
| kSumTree | |
| kHTML | |
| kCache | |
| kPackedStream | |
| kBWT | |
| kFMIndex | |
| kAlloc | |
| kSyncblocks | |
| kCondition | |
| kWorkQueue | |
| kAlignment | |
| kRank | |
| kQGram | |
| kSequence | |
| kWaveletTree | |
| kBloomFilter | |
| kALL | |
Definition at line 68 of file nvbio-test.cpp.
| int bwt_test | ( | ) |
Definition at line 42 of file bwt_test.cpp.
| int cache_test | ( | ) |
Definition at line 69 of file cache_test.cpp.
| int fastq_test | ( | const char * | filename) |
Definition at line 59 of file fastq_test.cpp.
| int fmindex_test | ( | int | argc, |
| char * | argv[] | ||
| ) |
| int main | ( | int | argc, |
| char * | argv[] | ||
| ) |
Definition at line 90 of file nvbio-test.cpp.
| int packedstream_test | ( | ) |
Definition at line 73 of file packedstream_test.cpp.
1.8.4